American Journal of Botany 97(1): 49-58. 2010. Data Supplement S3- page



Dovnload 0.7 Mb.
Pagina3/10
Datum22.07.2016
Grootte0.7 Mb.
1   2   3   4   5   6   7   8   9   10

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare TCTATGTTTA TAAGAAATTA TCGAATAGTC CTTA...... ..........

T_aestivum CCTATGTTTA TAAGAAATTA TCGAATAGTC CTTACTTCA. TATAGAACTA
2701 2750

A_stolonifera AAATCCTAAT GACTATAA.T TACCTAAGTT TTATAATATC TTGTTTAAGA

F_arundinaceum AAATCCTAAT GACTATAA.T TACCTAAGTT TTAGAATGCC TTGTTTAAGA

L_perenne AAATCCTAAT GACTATAA.T TACCTAAGTT TTAGAATGCC TTGTTTAAGA

B_distachyon .CA...TAAT TACTATAA.T TACCTAAGTT TTATAATGTC TTGTTTAAGA

O_nivara ....C.TATT TGATTGAA.T TTTCCCTTCC TTTTATCCTC CCGTCTTATA

O_sativa ....C.TATT TGATTGAA.T TTTCCCTTCC TTTTATCCTC CCGTCTTATA

S_bicolor AAATCCTAAT GACTAGAA.T TCTCTAAGTT TTAGAATGTC TTGTTTAAGA

S_officinarum AAATCCTAAT GACTAGAA.T TCTCTAAGTT TTAGAATGTC TTGTTTAAGA

Z_mays AAATCCTAAT GACTAGAA.T TCTCTAAGTT TTAGAATGTC TTGTTTAAGA

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare .........T GACTATAAAT TACCTAAGTT TTAGAATGTC TTGTTTAAGA

T_aestivum AAATCCTAAT GACTATAAAT TACCTAAGTT TTAGAATGTC TTGTTTAAGA
2751 2800

A_stolonifera GACTCAGGAT TTTTTGTTTT GATGGGTATT CCATT..... ATGGAATACC

F_arundinaceum GAC....... .......... .......... .......... ATGGAATACT

L_perenne GAC....... .......... .......... .......... ATGGAATACT

B_distachyon GACTCAGTAT TTTTTGTTTT ...TTAATTC GAATTCCATT ATGGAATACC

O_nivara .......... .......... ...TGGG... .......... ..GGATAGGC

O_sativa .......... .......... ...TGGG... .......... ..GGATAGGC

S_bicolor GACT...... .......... ...TGGAATT CAATT..... ATGCAATAGC

S_officinarum GACTAAGTAT TTTTTTT.AT ...TGGAATT CAATT..... ATGCAATAGC

Z_mays GACTAAGTAT TTTTTTTTAT ...TGGAATT CAATT..... ATGGAATAGC

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare GACTCAGTAT TTTTTGTTTT GATTAGAATT CCTTTCCTTT ATGGAATACA

T_aestivum GACTCAGTAT TTTTTGTTTT GATTGGAATT CCTTTCCTTT ATGGAATAC.
2801 2850

A_stolonifera ATA....... ..TCTGAACT TAATTAACTA TTTGGATTT. ....TCCCTT

F_arundinaceum AT........ ..TCTGAACT TAATTAACTA TTTTAATTT. ....TCCCTT

L_perenne AT........ ..TCTGAACT TAATTAACTA TTTTTATTT. ....TCCCTT

B_distachyon ATTCT.TAAC TTAATTAAAT AAATTAAATA TTTGCATTT. ....TCCGTT

O_nivara CC........ ..CCATACCT TATATCTGTA TATGGAGAGT A...TA....

O_sativa CC........ ..CCATACCT TATATCTGTA TATGGAGAGT A...TA....

S_bicolor TT........ ..TCTGAACT TAATTAACTA TTTGAATTGA ATTTTACCTT

S_officinarum TT........ ..TCTGAACT TAATTAACTA TTTGAATTGA ATTTTACCTT

Z_mays CT........ ..TCTGAACT TAATTAACTA TTTGAATTGA ATTTTACCTT

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare ATACAATATC ATTCTGAGCT TAATTAACTA TTTGAATTT. ....TCCCTT

T_aestivum .........C ATTCTGAACT TAATTAACTA TTTTCATTT. ....TCCCTT
2851 2900

A_stolonifera ....CTTTTT ATCCACCGGT CTTAT..... ACAGGGGATA CACTTCCGTA

F_arundinaceum ....CTTTTT ATCCACTCGT CTTAT..... ATAGGGGATA GGCTTCCATA

L_perenne ....CTTTTT ATCCACTCGT CTTAT..... ATAGGGGATA GGCTTCCATA

B_distachyon ....CTTTTT ACCCCCTCGT CTTAT..... ATGGGGGATA GACTTCCGTA

O_nivara ....CTTGAA A......... ..TAT..... AAATTGATTT AA.....ATA

O_sativa ....CTTGAA A......... ..TAT..... AAATTGATTT AA.....ATA

S_bicolor CCTTCTTTTT ATGCCCCCCT CTTAT..... ATGAGGGCTT ATCCCCCATA

S_officinarum CCTTCTTTTT ATGTCCCCCT CTTAT..... ATGAGGGCTT ATCCCCCATA

Z_mays ....CTTTTT ATCTCCCCCT CTTAT..... ATGAGGGCTT ATCCCCCATA

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare ....CTTTTT ATCCCCCCG. .......... ...GGGGATA GGCTTCCATA

T_aestivum ....CTTTTT ATCCCCCCGT CTTATCTTAT ATGGGGGATA GGCTTCCATA
2901 2950

A_stolonifera CCGTATATCT ATATATGGAG TATACTTGA. TATATAAATA TCTA..TAAA

F_arundinaceum CCATATATCT ATATATAGAG TATACTTTAC TATATAAATA TCTA..TAAA

L_perenne CCATATATCT ATATATAGAG TATACTTTAC TATATAAATA TATA..TAAA

B_distachyon CCGTATATCT ATATATGGAG TATCCTTGA. TATATAAATA TATAGATAAA

O_nivara GAAAACCTTT GTATATATTC TATATTATT. AAAACAAAGT CTAAAAAAAA

O_sativa GAAAACCTTT GTATATATTC TATATTATT. AAAACAAAGT CTAAAAAAAA

S_bicolor CCATATATTT ATATATGGAG TATATTTGA. TATATAAATT ..GATTTAAA

S_officinarum CCATATATTT ATATATGGAG TATATTTGA. TATATAAATT ..GATTTAAA

Z_mays CCATATATTT ATATATGGAG TATATTTGA. TATAGAAATT TTGATTTAAA

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare CCATATATCT ATATATGGAG TATACTTGA. TATATAAATA GATA..TAAA

T_aestivum CCATATATCT ATATATGGAG TATACTTGA. TATATAAATA GATA..TAAA
2951 3000

A_stolonifera TAGATTTAAA GGGGAAACCT TTCTATATAT TCT.ATATTA TTAGAACA.A

F_arundinaceum TAGATTTAAA CAGAAAACCT TTCTATATAT TCT.ATATTA TTAAAACA.A

L_perenne TAGATTTAAA CGGAAAACCT TTCTATATAT TCT.ATATTA TTAAAACA.A

B_distachyon TAGATTTAAA TGGAAAACCT TTCTATATAT TCT.ATATTA TTAAAACA.A

O_nivara TAT....... ...ATAATAT GTTAAAAAAC TCTTGTCTTA TC.....CGC

O_sativa TAT....... ...ATAATAT GTTAAAAAAC TCTTGTCTTA TC.....CGC

S_bicolor TAG....... ...AAAATCT ..TAAAAAAC TCTTGTCTTA TC.....CAC

S_officinarum TAG....... ...AAAATCT ..TAAAAAAC TCTTGTCTTA TCTTATCCAC

Z_mays TAG....... ...AAAAC.. ..TAAAAAAC TCT.GTCTTA TC....CGAC

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare TGG....... ...GAAACCC TTCTATATAT TCT.ATATTA TTAAAACA.A

T_aestivum TAGATTTAAA TGAGAAACCC TTCTATATAT TCT.ATATTA TTAAAAAACA
3001 3050

A_stolonifera AGTATAAAAT ATATACGGAA AAAAATTTT. TAAAATTCTT GT..CTTATC

F_arundinaceum AGTATAAAAT ATATACGGAA AAAAATTTAC TGAAATTCTT GT..CTTATC

L_perenne AGT.....A. .......... .......... .......... ..........

B_distachyon AGTTTAAAAT ATATACGGAA AAAGTGCTA. ACAAATTCTT GT..CTTATC

O_nivara ATTAGACAAA ATGAAGTAAA AAAG...... ...AATTC.. ..........

O_sativa ATTAGACAAA ATGAAGTAAA AAAG...... ...AATTC.. ..........

S_bicolor ATTAGACAAA ATGAACTAAA GAAG...... ...AATTT.. ..........

S_officinarum ATTAGACAAA ATGAACTAAA GAAG...... ...AATTT.. ..........

Z_mays ATTAGACAAA ATGAACTAAA GAAG...... ...AATTTT. ..........

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare AGTATAAAAT ATATACAGAA AAAATGTTT. AAAAATTCTT GT..CTTATC

T_aestivum AGTATAAAAT ATATAAAGAA AAAATGTTA. AAAAATTCTT GTTGCTTATC
3051 3100

A_stolonifera CGCATTAGAC AAAA..TTAA GTAAAAAATA ATTGAGAAT. ..TTCAGTAT

F_arundinaceum CAGATAAGAC AAGAATTTCA GTAAAAAATA ATTCAGAAT. ..TTCAGTAT

L_perenne .......... .......... ...AAAAATA ATTCAGAAT. ..TTCAGTAT

B_distachyon TGCATTAGAC AAAA..TGAA GTAAAAAATA ATTCAGAAT. ..TTAAATAT

O_nivara ......AGA. .........A TTTCAATATC TTTTA..... ..........

O_sativa ......AGA. .........A TTTCAATATC TTTTA..... ..........

S_bicolor ......AGA. .........A TTTAAGTATC TTTCAGTATC ATTTAAGTAT

S_officinarum ......AGA. .........A TTTAAGTATC TTTCAGTATC ATTTAAGTAT

Z_mays ......AGA. .........A TTTAAGTATC TTTCA..... ......GTAT

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare CGCATTAGAC AAAA..TGAA GTAAAAAATA ATTCACAAT. ..TTCAGTAT

T_aestivum CGCATTAGAC AAAA..TGAA GTAAAAAATA ATTCAAAAT. ..TTAAGTAT
3101 3150

A_stolonifera CTTTCAGTAT CTAAGTATAA ATACTAAGAA .......... ...AAAGAAG

F_arundinaceum CTTTCAATAT CTAAGTATAA ATACCAA... .......... ..........

L_perenne CTTTCAATAT CTGAGTATAA ATACCAA... .......... ..........

B_distachyon CTTTCAGTAT ATAAGTATAA ATACTAAGAA GAAATACTAA GAAAAAGAAG

O_nivara ......GTAT CTAAGTATAA ATACTAAGAA .......... ...AAAGAAG

O_sativa ......GTAT CTAAGTATAA ATACTAAGAA .......... ...AAAGAAG

S_bicolor CTTTCAGTAT CTAAGTATAA ATACTAAGAA .......... ...AAAACAG

S_officinarum CTTTCAGTAT CTAAGTATAA ATACTAAGAA .......... ...AAAACAG

Z_mays CTTTCAGTAT CTAAGTATAA ATACTAAGAA .......... ...AAAACAG

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare CTTTCAGTAT CTAAGTATAA ATACTAATAA .......... ...AAACAAG

T_aestivum CTTTCAGTAT CTAAGTATAA ATACTAATAA .......... ...AAAGAAG
3151 3200

A_stolonifera AAAGAAGGAT TGATTTGCCG GAATAGATGT CTTTCACATA CAACTAGAAA

F_arundinaceum .......... .......... ....AGATGT CTTTCACATA CAACTAGAAA

L_perenne .......... .......... ....AGATGT CTTTCACATA CAACTAGAAA

B_distachyon AAAGAAGGAT TGATTTGTGG CAATAGATGT CTTTCACATA CAACTAGAAA

O_nivara AAAAATGGAT TGATTTGCGG CAATAGATGT CTTTCACATA CAACTAGAAA

O_sativa AAAAATGGAT TGATTTGCGG CAATAGATGT CTTTCACATA CAACTAGAAA

S_bicolor AAAGAAGGAT TGATTTGCGG CAATAGATGT CTTTCACATA CAACTAGAAA

S_officinarum AAAGAAGGAT TGATTTGCGG CAATAGATGT CTTTCACATA CAACTAGAAA

Z_mays AAAGAAGGAT TGATTTGTGG CAATAGATGT CTTTCACATA CAACTAGAAA

P_aphrodite .......... .......... .......... .......... ..........

H_vulgare AAAGAAGGAT TGATTTGCAG CAATAGATGT CTTTCACATA CAACTAGAAA

T_aestivum AAAGAAGGAT TGATTTGCAG CAATAGATGT CTTTCACATA CAACTAGAAA
3201 3250

A_stolonifera AAACTAATTT CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCAATGT

F_arundinaceum AAAGTAATTT CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCAATGT

L_perenne AAAGTAATTT CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCAATGT

B_distachyon AAAGTAATTT CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCAATGT

O_nivara AAAGTAATTT CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCGATGT

O_sativa AAAGTAATTT CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCGATGT

S_bicolor AAAGTAATTC CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCGATGT

S_officinarum AAAGTAATTC CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCGATGT

Z_mays AA.GTAATTC CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCGATGT

P_aphrodite .......... .........A TGGCAGTTCC AAAAAAACGT ACTTCTATGT

H_vulgare AAAGTAATTT CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCAATGT

T_aestivum AAAGTAATTT CCTTTTTGAA TGGCAGTTCC AAAAAAACGT ACTTCAATGT
3251 3300

A_stolonifera CAAAAAAGCG TATTCGTAAA AATATTTGGA AGAAAAAAAC TTATTTTTCC

F_arundinaceum CAAAAAAGCG TATTCGTAAA AATATTTGGA AGAAAAAGAC TTATTTTTCC

L_perenne CAAAAAAGCG TATTCGTAAA AATATTTGGA AGAAAAAGAC TTATTTTTCC

B_distachyon CAAAAAAGCG TATTCGCAAA AATATTTGGA AAAATAAGAC TTATTTTTCC

O_nivara CAAAAAAGCG TATTCGTAAA AATCTTTGGA AGAAAAAGAC TTATTTTTCC

O_sativa CAAAAAAGCG TATTCGTAAA AATCTTTGGA AGAAAAAGAC TTATTTTTCC

S_bicolor CAAAAAAGCG TATTCGTAAA AATCTTTGGA AAAAAAAGAC TTATTTTTCC

S_officinarum CAAAAAAGCG TATTCGTAAA AATCTTTGGA AAAAAAAGAC TTATTTTTCC

Z_mays CAAAAAAGCG TATTCGTAAA AATCTTTGGA AAAAAAAGAC TTATTTTTCC

P_aphrodite CAAAAAAGCA TATTCGTAGA AATCTTTGGA AAAAAAAAGG ATCTTTAGCG

H_vulgare CAAAAAAGCG TATTCGTAAA AATATTTGGA AGAAAAAGAC TTATTTTTCC

T_aestivum CAAAAAAGCG TATTCGTAAA AATATTTGGA AGAAAAAGAC TTATTTTTCC
3301 3350

A_stolonifera ATAGTACACT CTTATTCTTT AGCAAAATCA AGATCATTTT CCAGCGGGAA

F_arundinaceum ATAGTACAGG CTTATTCTTT AGCAAAATCA AAATCATTTT CGAGTGGCAA

L_perenne ATAGTACAGG CTTATTCTTT AGCAAAATCA AAATCATTTT CGAGTGGCAA

B_distachyon ATAGTACAAT CTTATTGTTT AGCAAAATCA AGATCATTTT CCAGCGGTAA

O_nivara ATAGTACAAT CTTATTCTTT AGCAAAATCA AGATCATTTT CTGGCGTCAG

O_sativa ATAGTACAAT CTTATTCTTT AGCAAAATCA AGATCATTTT CTGGCGTCAG

S_bicolor ATAGTACAAT CTTATTCTTT AGCAAAATCA AGATCATTTT CTAGCGGCAA

S_officinarum ATAGTACAAT CTTATTCTTT AGCAAAATCA AGATCATTTT CTAGCGGCAA

Z_mays ATAGTACAAT CTTATTCTTT AGCAAAATCA AGATCATTTT CTAGGGGCAA

P_aphrodite GCAGTCAAAG CTTTTTCTTT AGC....TCA ATCTA..TTT CCACCGG...

H_vulgare ATAGTACAAT CTTATTCTTT AGTAAAATCA AGATCATTTT CCAGTGGTAA

T_aestivum ATAGTACAAT CTTATTCTTT AGTAAAATCA AGATCATTTT CGAGCGGTAA
3351 3400

A_stolonifera TGAACATCCA AAACCAAAGG GTTTTTCGGG GCAACAACAA CAAACAAACA

F_arundinaceum TGAGCATCCA AAACCAAAAG GTTTTTCTGG GCAACAA..G CAAACAAAAA

L_perenne TGAGCATCCA AAACCAAAAG GTTTTTCTAG GCAACAA..A CAAACAAA..

B_distachyon CGAGCATCCA AAACCAAAGG GTTTTTCTGG GAAACAA..A CAAACAAA..

O_nivara CGAGCATCCA AAACCAAAGG GTTTTTCTCG GCAACAA..A CAAACAAA..

O_sativa CGAGCATCCA AAACCAAAGG GTTTTTCTCG GCAACAA..A CAAACAAA..

S_bicolor CGAGCATCCA AAACCAAAAG GTTTTTCTGG GCAACAA..G CAAACAAA..

S_officinarum CGAGCATCCA AAACCAAAAG GTTTTTCTGG GCAACAA..G CAAACAAA..

Z_mays CGAGCATCCA AAACCAAAAG GTTTTTCTGG GCAACAA..G CAAACAAA..

P_aphrodite .........A CAATCAAAAA GTTTCTTTGT TGCACAA..A AAAA......

H_vulgare TGAGCATCCA AAACCAAAGG GTTTTTCTGG GCAACAA..A CAAACAAA..

T_aestivum TGAGCATCCA AAACCAAAGG GTTTTTCTGG GCAACAA..A CAAA......
3401 3450

A_stolonifera ..AATAATAA GGTTTTGGAA TAATCTGAAT TGACCTATCA AAAAAGTA.T

F_arundinaceum TCACTAGTGA ATTCGCGGCC GCCTGCAGGT CGACC.ATAT GGGAGAGC.T

L_perenne ....TAATAA GGTTTTGGAA TAATATGAAT TGACCTATCA AAAAATAA.T

B_distachyon ....TAATCT GGTTTTGGAA TAATCTGAAT TGACCTATCA AAAAACAA.T

O_nivara ....TAATAG GGTTTTGGGA TAATATGAAT TGACCTATCC CCAAAAAA.T

O_sativa ....TAATAG GGTTTTGGGA TAATATGAAT TGACCTATCC CCAAAAAA.T

S_bicolor ....TAATAA GATTTTGAAA TAATCAGAAT TGAACTATCC AAAAAAAAAT

S_officinarum ....TAATAA GATTTTGAAA TAATCTGAAT TGAACTATCC AAAAGAAA.T

Z_mays ....TAATAA GATTTTGAAA TAATCTGAAT TGAACTATCC AAAAGAAA.T

P_aphrodite .........A .GTCTTGGAA AAATCTTAAT TGATATGTTT CAAAGAACTT

H_vulgare ....TAATAA GATTTTGGAA TAATATGAAT TGATTTTTCA AAAAAGAA.T

T_aestivum ....TAATAA GATTTTTGAA TAATATGAAT TGACTTATCA AAAAAGAA.T
3451 3500

A_stolonifera TCCAATTACT TAAATATGAA TAATTT.GGA T......... TAATTA..AT

F_arundinaceum CCCAACGCGT TGGATAGAAA GAACCA.GGA TGAAACCAAG TAATTA..AG

L_perenne TCCAATTA.T TTAATATGAA TAATTT.GGA TTAATT.AAT TAATTA..AT

B_distachyon TCCAATTATT T.AATATGAA TAATTT.GGA T......... TAATTA..AT

O_nivara TCCAATTATT T.AATATGAA TAATTAGGAA TAATTAGGAT TAATTA..AT

O_sativa TCCAATTATT T.AATATGAA TAATTAGGAA TAATTAGGAT TAATTA..AT

S_bicolor TCCAATTATT T.AATATGAA T......GAA TAATTCAGAT TAATTA..AT

S_officinarum TCCAATTATT T.AATATCAA T......GAA TAATTCGGAT TAATTA..AT

Z_mays TCCAATTATT T.AATATGAA T......GAA TAATTCGGAT TAATTA..AT

P_aphrodite CCAAAGTATT G.....TGTA TTGTATTTTA TTTTACTTAT TAGTTATTAT

H_vulgare TCCAATTATT T.......AA TAATTT.GGA T......... TCTTCT..TT

T_aestivum TCCAATTATT T.......AA TAATTT.TGA T......... TCTTCT..TT
3501 3550

A_stolonifera TAATGTACTT TTATGTGTCG AA.TTACT.C GGTACAATAT TCTT.AGAAC

F_arundinaceum GAAACAACAT AGAAGACTCA AAATAACC.A AACAAAACAT TCAGGAGAAC

L_perenne TAATGTACTT TTATGTGTCG AA.TTACT.C AACACAAGAT TCTT.AGAAC

B_distachyon GAATGTACTT TTATGTGTCG AA.TTCCT.C GGTACAATAT TCTT.AGAAC

O_nivara GAGTTTACTT TTATGTGTCG AA.TTCCT.C GGTACAATAT TCTT.AGAAC

O_sativa GAGTTTACTT TTATGTGTCG AA.TTCCT.C GGTACAATAT TCTT.AGAAC

S_bicolor AAATGTACTT TTATGTGTCG AA.TTTCT.C GGTACAATAT TCTT.AGAAC

S_officinarum AAATGTACTT TTATGTGTCG AA.TTCCT.C GGTACAATAT TCTT.AGAAC

Z_mays AAATGTACTT TTATGTGTCG AA.TTCCT.C GGTACAATAT TCTT.AGAAC

P_aphrodite TAGTTAGTTA TTATTAGTTA GAGTTA.... AGTAATAGAA AAATAAGAAT

H_vulgare GAATGTACTT TTATGTGTCG AA.TTACTTC GGTACAATAT TCTT.ATAAC

T_aestivum GAATGTACTT TTATGTGTCG AA.TTACT.C GGTACAATAT TCTT.AGAAC
3551 3600

A_stolonifera AAA...TCCC T..TTGAT.. ...ATATAGA ATCAAAGTTT TG....GTAT

F_arundinaceum AAA...CACA TCCTAGACCC GCAAGAGGCA ACAAAAGCAC TA....GTAA

L_perenne AAA...CCCC TCCTATATCC GCTATATGGA ATAAAAGTTT TG....GTAT

B_distachyon AAA...CCCG TCCGATAT.. .....ATAGA ATAATAGTTT TT...GGTAT

O_nivara AAA.....CC TCTCTGAT.. ...ATATAAA AAAAGGGTTT TT...GGTAT

O_sativa AAA.....CC TCTCTGAT.. ...ATATAAA AAAAGGGTTT TT...GGTAT

S_bicolor GAAT...CCC TCCATTATCA T.TATATAGA ACAAAAGTTT TT...GGTAT

S_officinarum GAAT...CCC TCCATTATCA T.TATATAGA ACAAAAGTTT TT...GGTAT

Z_mays GAAT...CCC TCCATTATCA T.TATATAGA ACAAAAGTTT TT...GGTAT

P_aphrodite CTTTC.TGTC TACTTGAT.. ..TCGAAGTA CTCAGTATTG TATATTTTAT

H_vulgare AAA...CCCC TCTTATATA. ..TACAATAA AAAAAAGTTT TGTTTGGTAT

T_aestivum AAAAAACCCC TCTTATATA. ..TACAAGAA AAAAAAGTTT TGTTTGGTAT
3601 3650

A_stolonifera ACTGTGTGCT AAGTATTCTT TTACTATCAA TGATCAATGA AT..TTTTCA

F_arundinaceum ACTGTGTGCT AAGTATTCTT TTCCTATCAA AGAACTTT.. ....TTTTTA

L_perenne ACTGTGTGCT AAGTATTCTT G....ATCAA TAAACTTT.. ....TCCT..

B_distachyon ACTGTGTGCT AAGTATTCTT TTCCTATCAA TGAACTTT.. .......TCA

O_nivara ACTGTGACCT AAATATTCTT TTCCTATCAA TGAACTTTTC GTAATAGA.A

O_sativa ACTGTGACCT AAATATTCTT TTCCTATCAA TGAACTTTTC GTAATAGA.A

S_bicolor ATTGTGTCCT CAGTATTCTT TTCCTATCAA AGAACCTTTT TTT.ATTT.A

S_officinarum ATTGTGTCCT CAGTATTCTT TTCCTATCAA AGAACTTTTT TTTTATTT.A

Z_mays ATTGTGTCCT CAGTATTCTT TTCCTATCAA AGAACTTTTT TTT......A

P_aphrodite TTTTTTATAT CTTTATATCT ATTCTATTGA ..AATTTTGA TTTATTGATA

H_vulgare ACTGTGTGCT AAGTATTCTT TTCCTATCAA TGAACTTTTC ATAATTTTCA

T_aestivum ACTGTGTGCT AAGTATTCTT TTCCTATCAA TGAACTTTTC ATAATTTTCA
3651 3700

A_stolonifera T.AA.TAGAA TTCTCCCATT TTCATAATAA AATGGGAGAA TT.CTATTAT

F_arundinaceum T.AA.TAGAA TTCTC..... ...ATA.... AAAACGAGGA TT.CTATTAT

L_perenne ..AA.TAGAA TTCTC..... ...ATATTTT ATTATGAGAA TT.CTATTAG

B_distachyon T.AA.AAGAA TTCTC..... ...ATAATAA AATATGAGAA TT.CTTTTAT

O_nivara T.CCGTATAA TAAAT..... ...AAA.... AAA.AGGGGA TT.CTATTAT

O_sativa T.CCGTATAA TAAAT..... ...AAA.... AAA.AGGGGA TT.CTATTAT

S_bicolor T.AA.TAGAA TCCTC..... ...ATA.... AAA.CGAGGA TT.CTATTAT

S_officinarum T.AA.TAGAA TCCTC..... ...ATA.... AAAACGAGGA TT.CTATTAT

Z_mays T.AA.TAGAA TTCTC..... ...ATA.... AAAACGAGGA TT.CTATTAT

P_aphrodite TTGAATTGAA TTCGTAAGAT TTTTTTCTTT CCTATGAATT GTGCTTTTCA

H_vulgare T.AA.TAGAA TGCTC..... ...ATATTTT ATTATGAAAA ......TTAT

T_aestivum T.AA.TAAAA TATGA..... ...GGATTCT ATTATGAAAA ......TTAT
3701 3750

A_stolonifera GAAAAGTGGA GTATTCTTGC AATAGG..AC TTACCACTTC CA....TT.T

F_arundinaceum AAAAAGTAGA CTATTCTTGC AATAGG..AC TTACAACCTC TACCTAATCT

L_perenne GAAAAGTGGA GTCTTCTTGC AATAAA..AC TTACCACTTA CATCTATT.T

B_distachyon GAAAAGTGAA GTATTCTTGC AATAGG..AT TTAAAACTTC CACCT.ATCT

O_nivara GAAAAGTAGA GTATTCCTGC AATAAG..AC TTACAACTTC TACCTA.TCT

O_sativa GAAAAGTAGA GTATTCCTGC AATAAG..AC TTACAACTTC TACCTA.TCT

S_bicolor AAAAAGTAGA CTATTCTTGC AATAGG..AC TTACAACCTC TACCTAATCT

S_officinarum AAAAAGTAGA CTATTCTTGC AATAGG..AC TTACAACCTC TACCTAATCT

Z_mays AAAAAGTAGA CTATTCTTGC AATAGG..AC TTACAACCTC CACCTAATCT

P_aphrodite AAATAGAAAA GCACAATTAT GATAGACAAG TAAGAATCTT AATATTCCAT

H_vulgare GAAAAGTGGA GTATTCTTAC AATAGG..AC TTACAACTTC CACCT.ATCT

T_aestivum GAAAAGTGGA GTATTCTTAC AATAGG..AC TTACAACTTC TACCT.ATCT
3751 3800

A_stolonifera TCTCCAAAAT .........C ATTGGTTTAA GGTTAGTAAA GTAAATCCTA

F_arundinaceum TATCCAAAAT TCCCATATAA ATGGGTTTAG GACTGGTACG .....TCATA

L_perenne TCTCCAAAAT .........A ATTGGTTTAA GGTTAGTAAA .....TCCTA

B_distachyon TATCCAAAAT .........C ATTGCTTTAA GGTTGGTAAA .....TCCTA

O_nivara TATCCTAAAT TAACAAAAAA ATTAGTTCTA TATTG...CA .....ACTGA

O_sativa TATCCTAAAT TAACAAAAAA ATTAGTTCTA TATTG...CA .....ACTGA

S_bicolor TATCCAAAAT TCCCATATAA ATGAGTTTAG GACTGGTACA .....TCATA

S_officinarum TATCCAAAAT TCCCATATAA ATGGGTTTAG GACTGGTACA .....TCATA

Z_mays TATCCAAA.T TCCCATATAA ATGGGTTTAG GACTGGTACA .....TCATA

P_aphrodite TCTCTTAATA TTCC.....A TTCTACTTTA TACTACGTCC TTGGGTCTCA

H_vulgare TATCCAAAAT .......... ....C.ATAA GGTTAGTAAA .....TCTTA

T_aestivum TCTCCAAAAT .......... ....C.ATAA GGTTAGTAAA .....TCTTA
3801 3850

A_stolonifera TTAATACGAG CATAAAGACT TTCATTCTCT AAATTTTTCC T.........

F_arundinaceum TTAATAAGAG TGTAAAGGCT TTCATTCTAT CAATTTTTC. ..........

L_perenne TTAATAAGAG CATAAAGACT TTCATTCTTT AAATTTTGT. ..........

B_distachyon TTAATAAGAG CATAAAAGCT TTCATTCTAT AAATTTGTCT AAAATAAAAA

O_nivara GAAAAAATTG TTCCAACTCT TTCAAAGTTT CTATTGGGCA AAG.......

O_sativa GAAAAAATTG TTCCAACTCT TTCAAAGTTT CTATTGGGCA AAG.......

S_bicolor TTAATAAGAG TGTAAAGGCT TTCA....TT CTAT...... ..........

S_officinarum TTAATAAGAG TGTAAAGGCT TTCA....TT CTAT...... ..........

Z_mays TTAATAAGAG TGTAAAGGCT TTCA....TT CTAT...... ..........

P_aphrodite AAATCATTAG AAAAAAGATT ATGAA...TT TTATACTCCG ACTGAGAATG

H_vulgare TTAATAAGAG CATAAAGACT TTCATTCTAG AAATTTTTCA AAAATCCAAA

T_aestivum TTAATAAGAG CATAAAGACT TTCATTCTAG AAATTTTGAA AAAATCCAAA
3851 3900

A_stolonifera .......... ..TTT..ATT GAAAGAATTT TCA....... ..........

F_arundinaceum .......... ..TAA..A.. .ATACAAAAT GCA....... ..........

L_perenne .......... ..TCA..ATC AAAATAAAAT GGAAAAAA.. ..........

B_distachyon AGGGTTTCTA TTTAATGATG AAATTAAAAT GCATAAATAG AAAAGAG..T

O_nivara .......CAA GAATTTTTTT GTTAAAAAAT TCGC...... ..........

O_sativa .......CAA GAATTTTTTT GTTAAAAAAT TCGC...... ..........

S_bicolor ........AA ATTTTTCTAA AATACAAAAT TCAT...... ..........

S_officinarum ........AA ATTTTTCTAA AATACAAAAT TCAT...... ..........

Z_mays ........CA ATTTTTCTAA AATACAAAAT GCAT...... ..........

P_aphrodite AAACTTTTGA GTTCTGACTG TTCTGAATAA ACAA.AA... ..........

H_vulgare AAGCCTTTTC TATTT..ATC CATTTTAATT TCATCATTAA ATAGAAACCC

T_aestivum AAGCCTTTTC TATTT..ATC CATTTTAATT TCATCATTAA ATAGAAACCC
3901 3950

A_stolonifera .......... ...AAATTTA AGGGAGAATT TTA.....A. ..........

F_arundinaceum .......... .TTTCATTGT AG........ .......... ..........

L_perenne .......... .TTTAATTTT AGGGAGAAAC TAATTAGAAA ..........

B_distachyon TTTTGGATTT TCTCCATTGT ATCAAAAGAA TTTAAAAAAT GGAAACGAGA

O_nivara .......... .AACGATACT AC........ .......... ..........

O_sativa .......... .AACGATACT AC........ .......... ..........

S_bicolor .......... .TTC.ATTGT AG........ .......... ..........

S_officinarum .......... .TTC.ATTGT AG........ .......... ..........

Z_mays .......... .TTC.ATTGT AG........ .......... ..........

P_aphrodite ......GCTA GATTTATAGT ACGGATAAAA TT........ ..G.......

H_vulgare TTTTGGATTT TTTTCATTGT ATTGAAAGAA TTTTCAAAAT TTAAACGATA

T_aestivum TTTTTGGATT TTTTCATTGT ATTGAAAGAA TTTTCAAAAT GTAAACGAGA
3951 4000

A_stolonifera .......... AAAAATTAGT TCTATA.... ..TTGCACAA CTTATAAAAA

F_arundinaceum .......... .......... .......... .......... ....TTAATG

L_perenne .......... AAAAAAATTA GTTCTA.... ..TATTGCAA CTTATAAAAG

B_distachyon AACTAATTAA AAAAAAATTT CTTCTA.... ...TATTCCA ACTTAGAAAA

O_nivara .......... .......... .......... .......... ....CAAACG

O_sativa .......... .......... .......... .......... ....CAAACG

S_bicolor .......... .......... .......... .......... ....TTAATG

S_officinarum .......... .......... .......... .......... ....TTAATG

Z_mays .......... .......... .......... .......... ....TTAATG

P_aphrodite .......... .......... .......... .......... ATTATTAAAA

H_vulgare AATTAATTA. GAAAAAATTA GTTCTATATC TATAATTGCA AGTTAGAAAA

T_aestivum AATTAATTA. GAAAAAATTA GTTCTA.... ..TAATTGCA AGTTAGAAAA
4001 4050

A_stolonifera AAGTAGTTCC AACTCTTTCA AGGAGCCTTT ......CTAT TAGGCACAGC

F_arundinaceum ATG.A..... .......... .......... .......... ..........

L_perenne AGG.AGTTCC AAGTCTTTCA AGCGGTGTTT ......CCAT TAGGCAAAGC

B_distachyon AAGGAGTTCC AACTCTTTCA AGCAGTGTTT ......CTAT TAGGCAAAGC

O_nivara AAG....... .......... .......... .......... ..........

O_sativa AAG....... .......... .......... .......... ..........

S_bicolor ATG....... .......... .......... .......... ..........

S_officinarum ATG....... .......... .......... .......... ..........

Z_mays ATG....... .......... .......... .......... ..........

P_aphrodite ATGAACTTAT .......... ..GA...... .......... ..........

H_vulgare AAGAAGTTCC AACTCTTTCA ACCAGTGTTT ......CTAT TGGGCAAAGC



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